Genomic Characterization of a Newly Isolated Rhizobacteria Sphingomonas panacis Reveals Plant Growth Promoting Effect to Rice

Yeon Ju Kim; Jaewon Lim; Johan Sukweenadhi; Ji Woong Seok; Sang Won Lee; Jong Chan Park; Assiya Taizhanova; Donghyuk Kim; Deok Chun Yang

doi:10.1007/s12257-018-0386-2

Genomic Characterization of a Newly Isolated Rhizobacteria Sphingomonas panacis Reveals Plant Growth Promoting Effect to Rice

Yeon Ju Kim
, Jaewon Lim
, Johan Sukweenadhi
, Ji Woong Seok
, Sang Won Lee
, Jong Chan Park
, Assiya Taizhanova
, Donghyuk Kim
, Deok Chun Yang

Research output: Contribution to journal › Article › peer-review

13 Citations (Scopus)

Abstract

This article reports the full genome sequence of Sphingomonas panacis DCY99 ^T (=KCTC 42347 ^T =JCM30806 ^T ), which is a Gram-negative rod-shaped, non-spore forming, motile bacterium isolated from rusty ginseng root in South Korea. A draft genome of S. panacis DCY99T and a single circular plasmid were generated using the PacBio platform. Antagonistic activity experiment showed S. panacis DCY99T has the plant growth promoting effect. Thus, the genome sequence of S. panacis DCY99T may contribute to biotechnological application of the genus Sphingomonas in agriculture.

Original language	English
Pages (from-to)	119-125
Number of pages	7
Journal	Biotechnology and Bioprocess Engineering
Volume	24
Issue number	1
DOIs	https://doi.org/10.1007/s12257-018-0386-2
Publication status	Published - 1 Feb 2019

Bibliographical note

Publisher Copyright:
© 2019, The Korean Society for Biotechnology and Bioengineering and Springer.

Keywords

Sphingomonas panacis
Xanthomonas oryzae
genome
plant growth promoting rhizobacteria (PGPR)
systemic resistance

Access to Document

10.1007/s12257-018-0386-2

Cite this

@article{cac353ace91b4882bb5fd8b096fa12f5,

title = "Genomic Characterization of a Newly Isolated Rhizobacteria Sphingomonas panacis Reveals Plant Growth Promoting Effect to Rice",

abstract = " This article reports the full genome sequence of Sphingomonas panacis DCY99 T (=KCTC 42347 T =JCM30806 T ), which is a Gram-negative rod-shaped, non-spore forming, motile bacterium isolated from rusty ginseng root in South Korea. A draft genome of S. panacis DCY99T and a single circular plasmid were generated using the PacBio platform. Antagonistic activity experiment showed S. panacis DCY99T has the plant growth promoting effect. Thus, the genome sequence of S. panacis DCY99T may contribute to biotechnological application of the genus Sphingomonas in agriculture.",

keywords = "Sphingomonas panacis, Xanthomonas oryzae, genome, plant growth promoting rhizobacteria (PGPR), systemic resistance",

author = "Kim, \{Yeon Ju\} and Jaewon Lim and Johan Sukweenadhi and Seok, \{Ji Woong\} and Lee, \{Sang Won\} and Park, \{Jong Chan\} and Assiya Taizhanova and Donghyuk Kim and Yang, \{Deok Chun\}",

note = "Publisher Copyright: {\textcopyright} 2019, The Korean Society for Biotechnology and Bioengineering and Springer.",

year = "2019",

month = feb,

day = "1",

doi = "10.1007/s12257-018-0386-2",

language = "English",

volume = "24",

pages = "119--125",

journal = "Biotechnology and Bioprocess Engineering",

issn = "1226-8372",

publisher = "Korean Society for Biotechnology and Bioengineering",

number = "1",

}

TY - JOUR

T1 - Genomic Characterization of a Newly Isolated Rhizobacteria Sphingomonas panacis Reveals Plant Growth Promoting Effect to Rice

AU - Kim, Yeon Ju

AU - Lim, Jaewon

AU - Sukweenadhi, Johan

AU - Seok, Ji Woong

AU - Lee, Sang Won

AU - Park, Jong Chan

AU - Taizhanova, Assiya

AU - Kim, Donghyuk

AU - Yang, Deok Chun

PY - 2019/2/1

Y1 - 2019/2/1

N2 - This article reports the full genome sequence of Sphingomonas panacis DCY99 T (=KCTC 42347 T =JCM30806 T ), which is a Gram-negative rod-shaped, non-spore forming, motile bacterium isolated from rusty ginseng root in South Korea. A draft genome of S. panacis DCY99T and a single circular plasmid were generated using the PacBio platform. Antagonistic activity experiment showed S. panacis DCY99T has the plant growth promoting effect. Thus, the genome sequence of S. panacis DCY99T may contribute to biotechnological application of the genus Sphingomonas in agriculture.

AB - This article reports the full genome sequence of Sphingomonas panacis DCY99 T (=KCTC 42347 T =JCM30806 T ), which is a Gram-negative rod-shaped, non-spore forming, motile bacterium isolated from rusty ginseng root in South Korea. A draft genome of S. panacis DCY99T and a single circular plasmid were generated using the PacBio platform. Antagonistic activity experiment showed S. panacis DCY99T has the plant growth promoting effect. Thus, the genome sequence of S. panacis DCY99T may contribute to biotechnological application of the genus Sphingomonas in agriculture.

KW - Sphingomonas panacis

KW - Xanthomonas oryzae

KW - genome

KW - plant growth promoting rhizobacteria (PGPR)

KW - systemic resistance

UR - https://www.scopus.com/pages/publications/85061287287

U2 - 10.1007/s12257-018-0386-2

DO - 10.1007/s12257-018-0386-2

M3 - Article

AN - SCOPUS:85061287287

SN - 1226-8372

VL - 24

SP - 119

EP - 125

JO - Biotechnology and Bioprocess Engineering

JF - Biotechnology and Bioprocess Engineering

IS - 1

ER -

Genomic Characterization of a Newly Isolated Rhizobacteria Sphingomonas panacis Reveals Plant Growth Promoting Effect to Rice

Abstract

Bibliographical note

Keywords

Access to Document

Other files and links

Fingerprint

Cite this