Lysobacter terrae sp. Nov. isolated from Aglaia odorata rhizosphere soil

Hien T.T. Ngo; Kyunghwa Won; Juan Du; Heung Min Son; Yongjin Park; Moochang Kook; Ki Young Kim; Feng Xie Jin; Tae Hoo Yi

doi:10.1099/ijs.0.067397-0

Lysobacter terrae sp. Nov. isolated from Aglaia odorata rhizosphere soil

Hien T.T. Ngo
, Kyunghwa Won
, Juan Du
, Heung Min Son
, Yongjin Park
, Moochang Kook
, Ki Young Kim
, Feng Xie Jin
, Tae Hoo Yi

Research output: Contribution to journal › Article › peer-review

16 Citations (Scopus)

Abstract

A Gram-stain negative, facultatively anaerobic, non-motile, rod-shaped bacterium, designated strain THG-A13^T, was isolated from Aglaia odorata rhizosphere soil in Gyeonggi-do, Republic of Korea. Based on 16S rRNA gene sequence comparisons, strain THG-A13^T had close similarity with Lysobacter niabensis GH34-4^T (98.5%), Lysobacter oryzae YC6269^T (97.9%) and Lysobacter yangpyeongensis GH19-3^T (97.3%). Chemotaxonomic data revealed that strain THG-A13^T possesses ubiquinone-8 (Q8) as the predominant isoprenoid quinone and iso-C₁₅_:₀, iso-C₁₆_:₀ and iso-C₁₇_:₁v9c as the major fatty acids. The major polar lipids were phosphatidylethanolamine, phosphatidylglycerol) and diphosphatidylglycerol. The G+C content was 66.3 mol%. The DNA–DNA relatedness values between strain THG-A13^T and its closest phylogenetic neighbours were below 18.0%. These data corroborated the affiliation of strain THG-A13^T to the genus Lysobacter. These data suggest that the isolate represents a novel species for which the name Lysobacter terrae sp. nov. is proposed, with THG-A13^T as the type strain (5KACC 17646^T5JCM 19613^T).

Original language	English
Pages (from-to)	587-592
Number of pages	6
Journal	International Journal of Systematic and Evolutionary Microbiology
Volume	65
Issue number	2
DOIs	https://doi.org/10.1099/ijs.0.067397-0
Publication status	Published - 2015

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©2015 IUMS.

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title = "Lysobacter terrae sp. Nov. isolated from Aglaia odorata rhizosphere soil",

abstract = "A Gram-stain negative, facultatively anaerobic, non-motile, rod-shaped bacterium, designated strain THG-A13T, was isolated from Aglaia odorata rhizosphere soil in Gyeonggi-do, Republic of Korea. Based on 16S rRNA gene sequence comparisons, strain THG-A13T had close similarity with Lysobacter niabensis GH34-4T (98.5\%), Lysobacter oryzae YC6269T (97.9\%) and Lysobacter yangpyeongensis GH19-3T (97.3\%). Chemotaxonomic data revealed that strain THG-A13T possesses ubiquinone-8 (Q8) as the predominant isoprenoid quinone and iso-C15:0, iso-C16:0 and iso-C17:1v9c as the major fatty acids. The major polar lipids were phosphatidylethanolamine, phosphatidylglycerol) and diphosphatidylglycerol. The G+C content was 66.3 mol\%. The DNA–DNA relatedness values between strain THG-A13T and its closest phylogenetic neighbours were below 18.0\%. These data corroborated the affiliation of strain THG-A13T to the genus Lysobacter. These data suggest that the isolate represents a novel species for which the name Lysobacter terrae sp. nov. is proposed, with THG-A13T as the type strain (5KACC 17646T5JCM 19613T).",

author = "Ngo, \{Hien T.T.\} and Kyunghwa Won and Juan Du and Son, \{Heung Min\} and Yongjin Park and Moochang Kook and Kim, \{Ki Young\} and Jin, \{Feng Xie\} and Yi, \{Tae Hoo\}",

note = "Publisher Copyright: {\textcopyright}2015 IUMS.",

year = "2015",

doi = "10.1099/ijs.0.067397-0",

language = "English",

volume = "65",

pages = "587--592",

journal = "International Journal of Systematic and Evolutionary Microbiology",

issn = "1466-5026",

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T1 - Lysobacter terrae sp. Nov. isolated from Aglaia odorata rhizosphere soil

AU - Ngo, Hien T.T.

AU - Won, Kyunghwa

AU - Du, Juan

AU - Son, Heung Min

AU - Park, Yongjin

AU - Kook, Moochang

AU - Kim, Ki Young

AU - Jin, Feng Xie

AU - Yi, Tae Hoo

PY - 2015

Y1 - 2015

N2 - A Gram-stain negative, facultatively anaerobic, non-motile, rod-shaped bacterium, designated strain THG-A13T, was isolated from Aglaia odorata rhizosphere soil in Gyeonggi-do, Republic of Korea. Based on 16S rRNA gene sequence comparisons, strain THG-A13T had close similarity with Lysobacter niabensis GH34-4T (98.5%), Lysobacter oryzae YC6269T (97.9%) and Lysobacter yangpyeongensis GH19-3T (97.3%). Chemotaxonomic data revealed that strain THG-A13T possesses ubiquinone-8 (Q8) as the predominant isoprenoid quinone and iso-C15:0, iso-C16:0 and iso-C17:1v9c as the major fatty acids. The major polar lipids were phosphatidylethanolamine, phosphatidylglycerol) and diphosphatidylglycerol. The G+C content was 66.3 mol%. The DNA–DNA relatedness values between strain THG-A13T and its closest phylogenetic neighbours were below 18.0%. These data corroborated the affiliation of strain THG-A13T to the genus Lysobacter. These data suggest that the isolate represents a novel species for which the name Lysobacter terrae sp. nov. is proposed, with THG-A13T as the type strain (5KACC 17646T5JCM 19613T).

AB - A Gram-stain negative, facultatively anaerobic, non-motile, rod-shaped bacterium, designated strain THG-A13T, was isolated from Aglaia odorata rhizosphere soil in Gyeonggi-do, Republic of Korea. Based on 16S rRNA gene sequence comparisons, strain THG-A13T had close similarity with Lysobacter niabensis GH34-4T (98.5%), Lysobacter oryzae YC6269T (97.9%) and Lysobacter yangpyeongensis GH19-3T (97.3%). Chemotaxonomic data revealed that strain THG-A13T possesses ubiquinone-8 (Q8) as the predominant isoprenoid quinone and iso-C15:0, iso-C16:0 and iso-C17:1v9c as the major fatty acids. The major polar lipids were phosphatidylethanolamine, phosphatidylglycerol) and diphosphatidylglycerol. The G+C content was 66.3 mol%. The DNA–DNA relatedness values between strain THG-A13T and its closest phylogenetic neighbours were below 18.0%. These data corroborated the affiliation of strain THG-A13T to the genus Lysobacter. These data suggest that the isolate represents a novel species for which the name Lysobacter terrae sp. nov. is proposed, with THG-A13T as the type strain (5KACC 17646T5JCM 19613T).

UR - https://www.scopus.com/pages/publications/84927171815

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DO - 10.1099/ijs.0.067397-0

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C2 - 25406233

AN - SCOPUS:84927171815

SN - 1466-5026

VL - 65

SP - 587

EP - 592

JO - International Journal of Systematic and Evolutionary Microbiology

JF - International Journal of Systematic and Evolutionary Microbiology

IS - 2

ER -

Lysobacter terrae sp. Nov. isolated from Aglaia odorata rhizosphere soil

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