Nomenclature report on rice WRKY's - conflict regarding gene names and its solution

Qingxi J. Shen; Diqiu Yu; Jong Seong Jeon; Pietro Piffanelli; Pamela Abbruscato; Ze Jian Guo; Yuanji Zhang; Takeshi Itoh; Sung S. Lee; C. Robin Buell; Yasuo Nagato; Susan McCouch; Masahiro Yano; Guo liang Wang; Kshirod K. Jena; Lizhong Xiong; Blake Meyers; Pankaj Jaiswal; Yukiko Yamazaki

doi:10.1186/1939-8433-5-3

Nomenclature report on rice WRKY's - conflict regarding gene names and its solution

Qingxi J. Shen, Diqiu Yu, Jong Seong Jeon, Pietro Piffanelli, Pamela Abbruscato, Ze Jian Guo, Yuanji Zhang, Takeshi Itoh, Sung S. Lee, C. Robin Buell, Yasuo Nagato, Susan McCouch, Masahiro Yano, Guo liang Wang, Kshirod K. Jena, Lizhong Xiong, Blake Meyers, Pankaj Jaiswal, Yukiko Yamazaki

Research output: Contribution to journal › Article › peer-review

40 Citations (Scopus)

Abstract

Background: Since whole genome sequences of rice were made publically accessible, the number of articles on new rice genes has increased remarkably. The Committee on Gene Symbolization, Nomenclature and Linkage (CGSNL) of the Rice Genetics Cooperative published the gene nomenclature system for rice and encouraged researchers to follow the rules before publishing their results. The CGSNL provides an on-line registration system for newly identified rice genes to prevent conflicts and/or duplication of gene name in journal articles. Findings: Recently, the CGSNL surveyed genes in the rice WRKY family in published journal articles and found several duplicated gene names. Conclusions: To discuss and resolve inconsistencies in WRKY gene nomenclature, the rice WRKY working group was established and redefined the nomenclature. This report announces the conclusion.

Original language	English
Article number	3
Pages (from-to)	1-3
Number of pages	3
Journal	Rice
Volume	5
Issue number	1
DOIs	https://doi.org/10.1186/1939-8433-5-3
Publication status	Published - 2012

Keywords

Family gene
Gene nomenclature
Rice
WRKY

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Shen, Q. J., Yu, D., Jeon, J. S., Piffanelli, P., Abbruscato, P., Guo, Z. J., Zhang, Y., Itoh, T., Lee, S. S., Buell, C. R., Nagato, Y., McCouch, S., Yano, M., Wang, G. L., Jena, K. K., Xiong, L., Meyers, B., Jaiswal, P., & Yamazaki, Y. (2012). Nomenclature report on rice WRKY's - conflict regarding gene names and its solution. Rice, 5(1), 1-3. Article 3. https://doi.org/10.1186/1939-8433-5-3

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title = "Nomenclature report on rice WRKY's - conflict regarding gene names and its solution",

abstract = "Background: Since whole genome sequences of rice were made publically accessible, the number of articles on new rice genes has increased remarkably. The Committee on Gene Symbolization, Nomenclature and Linkage (CGSNL) of the Rice Genetics Cooperative published the gene nomenclature system for rice and encouraged researchers to follow the rules before publishing their results. The CGSNL provides an on-line registration system for newly identified rice genes to prevent conflicts and/or duplication of gene name in journal articles. Findings: Recently, the CGSNL surveyed genes in the rice WRKY family in published journal articles and found several duplicated gene names. Conclusions: To discuss and resolve inconsistencies in WRKY gene nomenclature, the rice WRKY working group was established and redefined the nomenclature. This report announces the conclusion.",

keywords = "Family gene, Gene nomenclature, Rice, WRKY",

author = "Shen, {Qingxi J.} and Diqiu Yu and Jeon, {Jong Seong} and Pietro Piffanelli and Pamela Abbruscato and Guo, {Ze Jian} and Yuanji Zhang and Takeshi Itoh and Lee, {Sung S.} and Buell, {C. Robin} and Yasuo Nagato and Susan McCouch and Masahiro Yano and Wang, {Guo liang} and Jena, {Kshirod K.} and Lizhong Xiong and Blake Meyers and Pankaj Jaiswal and Yukiko Yamazaki",

year = "2012",

doi = "10.1186/1939-8433-5-3",

language = "English",

volume = "5",

pages = "1--3",

journal = "Rice",

issn = "1939-8425",

publisher = "Springer Publishing Company",

number = "1",

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TY - JOUR

T1 - Nomenclature report on rice WRKY's - conflict regarding gene names and its solution

AU - Shen, Qingxi J.

AU - Yu, Diqiu

AU - Jeon, Jong Seong

AU - Piffanelli, Pietro

AU - Abbruscato, Pamela

AU - Guo, Ze Jian

AU - Zhang, Yuanji

AU - Itoh, Takeshi

AU - Lee, Sung S.

AU - Buell, C. Robin

AU - Nagato, Yasuo

AU - McCouch, Susan

AU - Yano, Masahiro

AU - Wang, Guo liang

AU - Jena, Kshirod K.

AU - Xiong, Lizhong

AU - Meyers, Blake

AU - Jaiswal, Pankaj

AU - Yamazaki, Yukiko

PY - 2012

Y1 - 2012

N2 - Background: Since whole genome sequences of rice were made publically accessible, the number of articles on new rice genes has increased remarkably. The Committee on Gene Symbolization, Nomenclature and Linkage (CGSNL) of the Rice Genetics Cooperative published the gene nomenclature system for rice and encouraged researchers to follow the rules before publishing their results. The CGSNL provides an on-line registration system for newly identified rice genes to prevent conflicts and/or duplication of gene name in journal articles. Findings: Recently, the CGSNL surveyed genes in the rice WRKY family in published journal articles and found several duplicated gene names. Conclusions: To discuss and resolve inconsistencies in WRKY gene nomenclature, the rice WRKY working group was established and redefined the nomenclature. This report announces the conclusion.

AB - Background: Since whole genome sequences of rice were made publically accessible, the number of articles on new rice genes has increased remarkably. The Committee on Gene Symbolization, Nomenclature and Linkage (CGSNL) of the Rice Genetics Cooperative published the gene nomenclature system for rice and encouraged researchers to follow the rules before publishing their results. The CGSNL provides an on-line registration system for newly identified rice genes to prevent conflicts and/or duplication of gene name in journal articles. Findings: Recently, the CGSNL surveyed genes in the rice WRKY family in published journal articles and found several duplicated gene names. Conclusions: To discuss and resolve inconsistencies in WRKY gene nomenclature, the rice WRKY working group was established and redefined the nomenclature. This report announces the conclusion.

KW - Family gene

KW - Gene nomenclature

KW - Rice

KW - WRKY

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U2 - 10.1186/1939-8433-5-3

DO - 10.1186/1939-8433-5-3

M3 - Article

AN - SCOPUS:84861474485

SN - 1939-8425

VL - 5

SP - 1

EP - 3

JO - Rice

JF - Rice

IS - 1

M1 - 3

ER -

Nomenclature report on rice WRKY's - conflict regarding gene names and its solution

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