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Novosphingobium lotistagni sp. nov., isolated from a lotus pond

  • Hien T.T. Ngo
  • , Huan Trinh
  • , Jung Hee Kim
  • , Jung Eun Yang
  • , Kyung Hwa Won
  • , Ju Han Kim
  • , Moochang Kook
  • , Tae Hoo Yi

Research output: Contribution to journalArticlepeer-review

6 Citations (Scopus)

Abstract

A Gram-staining-negative, aerobic, non-motile, rod-shaped and yellow-pigmented bacterium, designated strain THG-DN6.20T, was isolated from a lotus pond near Donghaksa temple in Daejeon, Republic of Korea. According to 16S rRNA gene sequence comparisons, strain THGDN6.20T was found to be most closely related to Novosphingobium rosa IFO 15208T (97.6% sequence similarity), Novosphingobium sediminicola HU1-AH51T (97.5 %) and Novosphingobium barchaimii LL02T (96.9 %). The DNA–DNA relatedness between strain THGDN6.20T and its phylogenetically closest neighbours was below 60.0 %. The respiratory quinone and polyamine detected in strain THG-DN6.20T were ubiquinone Q-10 and spermidine, respectively. The DNA G+C content was 63.1 mol%. The major polar lipids were found to be phosphatidylethanolamine, diphosphatidylglycerol, sphingoglycolipid and phosphatidylcholine. The major fatty acids were identified as C16: 0, summed feature 3 (C16:7c and/or C16:6c), summed feature 8 (C18:7c and/or C18:6c) and C14: 02-OH. These data supported the affiliation of strain THG-DN6.20T to the genus Novosphingobium. Strain THG-DN6.20T could be distinguished from related species of the genus Novosphingobium by physiological and biochemical characteristics. Therefore, the novel isolate represents a novel species, for which the name Novosphingobium lotistagni sp. nov. is proposed, with THG-DN6.20T as the type strain (=KACC 18541T=CCTCC AB 2015354T).

Original languageEnglish
Article number001418
Pages (from-to)4729-4734
Number of pages6
JournalInternational Journal of Systematic and Evolutionary Microbiology
Volume66
Issue number11
DOIs
Publication statusPublished - Nov 2016

Bibliographical note

Publisher Copyright:
© 2016 IUMS.

Keywords

  • 16S rRNA gene
  • Novosphingobium lotistagni
  • Phosphatidylcholine

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