The Rice Kinase Phylogenomics Database: A guide for systematic analysis of the rice kinase super-family

Ki Hong Jung; Peijian Cao; Young Su Seo; Christopher Dardick; Pamela C. Ronald

doi:10.1016/j.tplants.2010.08.004

The Rice Kinase Phylogenomics Database: A guide for systematic analysis of the rice kinase super-family

Ki Hong Jung, Peijian Cao, Young Su Seo, Christopher Dardick, Pamela C. Ronald

Research output: Contribution to journal › Short survey › peer-review

51 Citations (Scopus)

Abstract

Determination of gene function is particularly problematic when studying large-gene families because redundancy limits the ability to assess the contributions of individual genes experimentally. Phylogenomics is a phylogenetic approach used in comparative genomics to predict the biological functions of members of large gene-families by assessing the similarity among gene products. In this report, we describe the application of the Rice Kinase Database for elucidating functions of individual members of this gene family.

Original language	English
Pages (from-to)	595-599
Number of pages	5
Journal	Trends in Plant Science
Volume	15
Issue number	11
DOIs	https://doi.org/10.1016/j.tplants.2010.08.004
Publication status	Published - Nov 2010

Bibliographical note

Funding Information:
We thank Dr. Blake Meyers and Dr. Kan Nobuta for providing MPSS signatures data, Dr. Gynheung An for providing the information about T-DNA insertional lines developed in Kyung Hee University, Korea and Dr. Harkamal Walia for useful discussions. This work was supported by a Department of Energy grant to the Joint Bioenergy Institute (Grant no. DE-AC02-05CH11231) and a National Science Foundation Plant Genome Research Program (Grant no. DBI0313887) to PCR, and a Young Scientist Program through the National Research Foundation of Korea (Grant no. 2010-0981) to KHJ.

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title = "The Rice Kinase Phylogenomics Database: A guide for systematic analysis of the rice kinase super-family",

abstract = "Determination of gene function is particularly problematic when studying large-gene families because redundancy limits the ability to assess the contributions of individual genes experimentally. Phylogenomics is a phylogenetic approach used in comparative genomics to predict the biological functions of members of large gene-families by assessing the similarity among gene products. In this report, we describe the application of the Rice Kinase Database for elucidating functions of individual members of this gene family.",

author = "Jung, {Ki Hong} and Peijian Cao and Seo, {Young Su} and Christopher Dardick and Ronald, {Pamela C.}",

note = "Funding Information: We thank Dr. Blake Meyers and Dr. Kan Nobuta for providing MPSS signatures data, Dr. Gynheung An for providing the information about T-DNA insertional lines developed in Kyung Hee University, Korea and Dr. Harkamal Walia for useful discussions. This work was supported by a Department of Energy grant to the Joint Bioenergy Institute (Grant no. DE-AC02-05CH11231) and a National Science Foundation Plant Genome Research Program (Grant no. DBI0313887) to PCR, and a Young Scientist Program through the National Research Foundation of Korea (Grant no. 2010-0981) to KHJ. ",

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doi = "10.1016/j.tplants.2010.08.004",

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AU - Cao, Peijian

AU - Seo, Young Su

AU - Dardick, Christopher

AU - Ronald, Pamela C.

N1 - Funding Information: We thank Dr. Blake Meyers and Dr. Kan Nobuta for providing MPSS signatures data, Dr. Gynheung An for providing the information about T-DNA insertional lines developed in Kyung Hee University, Korea and Dr. Harkamal Walia for useful discussions. This work was supported by a Department of Energy grant to the Joint Bioenergy Institute (Grant no. DE-AC02-05CH11231) and a National Science Foundation Plant Genome Research Program (Grant no. DBI0313887) to PCR, and a Young Scientist Program through the National Research Foundation of Korea (Grant no. 2010-0981) to KHJ.

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AB - Determination of gene function is particularly problematic when studying large-gene families because redundancy limits the ability to assess the contributions of individual genes experimentally. Phylogenomics is a phylogenetic approach used in comparative genomics to predict the biological functions of members of large gene-families by assessing the similarity among gene products. In this report, we describe the application of the Rice Kinase Database for elucidating functions of individual members of this gene family.

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The Rice Kinase Phylogenomics Database: A guide for systematic analysis of the rice kinase super-family

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