Transcriptome profiling analysis using rice oligonucleotide microarrays

Ki Hong Jung; Pamela C. Ronald

doi:10.1007/978-1-62703-194-3_8

Transcriptome profiling analysis using rice oligonucleotide microarrays

Ki Hong Jung, Pamela C. Ronald

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

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Abstract

Transcriptome analysis using oligonucleotide microarrays is a powerful tool for detecting changes in genome-wide transcripts under a given biological condition. Although the rice genome sequence is available, the number of functionally characterized genes in rice is still very limited. Genome-wide transcriptome analysis is a useful tool for elucidating the functions of rice genes that have not yet been determined. Currently, more than 3,000 arrays are publicly available. Here, we introduce methods for genome-wide transcriptome analysis in rice.

Original language	English
Title of host publication	Rice Protocols
Publisher	Humana Press Inc.
Pages	95-107
Number of pages	13
ISBN (Print)	9781627031936
DOIs	https://doi.org/10.1007/978-1-62703-194-3_8
Publication status	Published - 2013

Publication series

Name	Methods in Molecular Biology
Volume	956
ISSN (Print)	1064-3745

Keywords

GEO
Hybridization
Microarray
Rice
aRNA

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10.1007/978-1-62703-194-3_8

Cite this

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AB - Transcriptome analysis using oligonucleotide microarrays is a powerful tool for detecting changes in genome-wide transcripts under a given biological condition. Although the rice genome sequence is available, the number of functionally characterized genes in rice is still very limited. Genome-wide transcriptome analysis is a useful tool for elucidating the functions of rice genes that have not yet been determined. Currently, more than 3,000 arrays are publicly available. Here, we introduce methods for genome-wide transcriptome analysis in rice.

KW - GEO

KW - Hybridization

KW - Microarray

KW - Rice

KW - aRNA

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ER -

Transcriptome profiling analysis using rice oligonucleotide microarrays

Abstract

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