Undibacterium piscinae sp. Nov., isolated from Korean shiner intestine

So Yeon Lee, Woorim Kang, Pil Soo Kim, Hyun Sik Kim, Hojun Sung, Na Ri Shin, Tae Woong Whon, Ji Hyun Yun, Jae Yun Lee, June Young Lee, Mi Ja Jung, Yun Seok Jeong, Euon Jung Tak, Jeong Eun Han, Dong Wook Hyun, Myung Suk Kang, Ki Eun Lee, Byoung Hee Lee, Jin Woo Bae

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13 Citations (Scopus)

Abstract

A novel Gram-stain-negative, non-spore-forming, obligate aerobic, motile, rod-shaped, and flagellated bacterium, designated S11R28T, was isolated from the intestinal tract of a Korean shiner, Coreoleuciscus splendidus. Based on 16S rRNA gene sequences, strain S11R28T was identified as member of the genus Undibacterium in class Betaproteobacteria, and was closely related to Undibacterium parvum DSM 23061T(98.49 %). The isolate grew at 4-25 °C, pH 6-9, with 0 % (w/v) NaCl, and grew optimally at 20 °C, pH 8, in the absence of NaCl. The main cellular fatty acids were C16 : 0 and summed features 3 (C16 : 1ω7c and/or C16 : 1ω6c). The strain possessed diphosphatidylglycerol, phosphatidylglycerol, and phosphatidylethanolamine as predominant polar lipids, and ubiquinone Q-8 as a respiratory quinone. The polyamine profile composed of 2-hydroxyputrescine, spermidine, putrescine, and benzoic acid. A genomic DNA G+C content was 51.4 mol%. The average nucleotide identity between strains S11R28Tand U. parvum DSM 23061T was 78.66 %. Thus, Undibacterium piscinae can be considered a novel species within the genus Undibacterium with the type strain S11R28T(=KCTC 62668T=JCM 33224T).

Original languageEnglish
Article number003604
JournalInternational Journal of Systematic and Evolutionary Microbiology
Volume69
Issue number10
DOIs
Publication statusPublished - 2019

Bibliographical note

Publisher Copyright:
© 2019 IUMS.

Keywords

  • Gut microbiota
  • Korean shiner
  • Undibacterium
  • Undibacterium piscinae

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